{
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  "Package": "TraitEnvMLMWA",
  "Title": "Weighted Averaging (WA) and Multi-Level Methods (MLM) for\nTrait-Environment Association in Functional and Community\nEcology",
  "Version": "0.9001",
  "Authors@R": "person(\"Cajo\", \"ter Braak\", email = \"Cajo.terBraak@wur.nl\", role = c(\"aut\", \"cre\"))",
  "Description": "This package grew out of the paper New robust weighted\naveraging- and model-based methods for assessing\ntrait-environment relationships (Methods in Ecology and\nEvolution). The model-based methods are GLMMs, here called\nmulti-level models (MLM), of which the novel MLM3 outperforms\nall existing methods. MLM3 has up to 30% more power, but the\nWA-methods are 500 times faster than MLM3. The main function\nfor WA-methods is CWMSNC_regressions. The main functions for\nMLM3 are make_obj_for_traitenv, expand4glmm and MLM3_p_max.",
  "License": "GPL-3 | file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-17 06:21:45 UTC",
    "User": "root"
  },
  "Author": "Cajo ter Braak [aut, cre]",
  "Maintainer": "Cajo ter Braak <Cajo.terBraak@wur.nl>",
  "Config/pak/sysreqs": "cmake make libicu-dev",
  "Repository": "https://cajoterbraak.r-universe.dev",
  "Date/Publication": "2022-12-29 12:25:29 UTC",
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    "author": "Cajo J.F. ter Braak <cajo.terbraak@wur.nl>",
    "committer": "Cajo J.F. ter Braak <cajo.terbraak@wur.nl>",
    "message": "doc change\n",
    "time": 1672316729
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    "email": "cajo.terbraak@wur.nl",
    "login": "cajoterbraak",
    "description": "Professor emeritus in multivariate analysis for community ecology and Bayesian computiing",
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    "CWMSNC_regressions",
    "dat4MLM2TE_obj",
    "expand4glmm",
    "make_obj_for_traitenv",
    "MLM3_p_max",
    "plot_MLM3",
    "WA_p_max"
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      "name": "MLM3",
      "title": "MLM3-fit to Revisit data using trait C:N ratio and environmental variable TMG",
      "object": "MLM3",
      "class": [
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      "tojson": false
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      "object": "MLM3_Aravo",
      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": false
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      "name": "Revisit",
      "title": "Revisit data",
      "object": "Revisit",
      "class": [
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        "species",
        "trait",
        "env",
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        "y"
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    {
      "page": "Bootstrap_test_prmtrc",
      "title": "Parametric bootstrap test of trait-environment assocation using the MLM models",
      "topics": [
        "Bootstrap_test_prmtrc"
      ]
    },
    {
      "page": "CWMSNC_regressions",
      "title": "Weigthed averaging methods for pairwise trait-environment associations",
      "topics": [
        "CWMSNC_regressions"
      ]
    },
    {
      "page": "dat4MLM2TE_obj",
      "title": "Utility function dat4MLM2TE_obj",
      "topics": [
        "dat4MLM2TE_obj"
      ]
    },
    {
      "page": "expand4glmm",
      "title": "Utility function expand4glmm",
      "topics": [
        "expand4glmm"
      ]
    },
    {
      "page": "make_obj_for_traitenv",
      "title": "Utility function make_obj_for_traitenv",
      "topics": [
        "make_obj_for_traitenv"
      ]
    },
    {
      "page": "MLM3",
      "title": "MLM3-fit to Revisit data using trait C:N ratio and environmental variable TMG",
      "topics": [
        "MLM3"
      ]
    },
    {
      "page": "MLM3_Aravo",
      "title": "quadratic MLM3-fit to Aravo data using SLA and Snow",
      "topics": [
        "MLM3_Aravo"
      ]
    },
    {
      "page": "MLM3_p_max",
      "title": "Permutational max test of trait-environment assocation for MLM models",
      "topics": [
        "MLM3_p_max"
      ]
    },
    {
      "page": "plot_MLM3",
      "title": "Plotting the interaction of a MLM3 model",
      "topics": [
        "plot_MLM3"
      ]
    },
    {
      "page": "plot.CWMSNCr",
      "title": "Plotting the results of a weigthed averaging-based analysis of pairwise trait-environment association(s)",
      "topics": [
        "plot.CWMSNCr"
      ]
    },
    {
      "page": "Revisit",
      "title": "Revisit data",
      "topics": [
        "Revisit"
      ]
    },
    {
      "page": "summary.CWMSNCr",
      "title": "Summary of a weigthed averaging-based analysis of trait-environment association",
      "topics": [
        "summary.CWMSNCr"
      ]
    },
    {
      "page": "WA_p_max",
      "title": "Max test for the joint association between multiple traits and environmental variables (incl. nominal variables) using weighted averaging methods (CWM/SNC regression)",
      "topics": [
        "WA_p_max"
      ]
    }
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