Package: TraitEnvMLMWA 0.9001
TraitEnvMLMWA: Weighted Averaging (WA) and Multi-Level Methods (MLM) for Trait-Environment Association in Functional and Community Ecology
This package grew out of the paper New robust weighted averaging- and model-based methods for assessing trait-environment relationships (Methods in Ecology and Evolution). The model-based methods are GLMMs, here called multi-level models (MLM), of which the novel MLM3 outperforms all existing methods. MLM3 has up to 30% more power, but the WA-methods are 500 times faster than MLM3. The main function for WA-methods is CWMSNC_regressions. The main functions for MLM3 are make_obj_for_traitenv, expand4glmm and MLM3_p_max.
Authors:
TraitEnvMLMWA_0.9001.tar.gz
TraitEnvMLMWA_0.9001.zip(r-4.5)TraitEnvMLMWA_0.9001.zip(r-4.4)TraitEnvMLMWA_0.9001.zip(r-4.3)
TraitEnvMLMWA_0.9001.tgz(r-4.4-any)TraitEnvMLMWA_0.9001.tgz(r-4.3-any)
TraitEnvMLMWA_0.9001.tar.gz(r-4.5-noble)TraitEnvMLMWA_0.9001.tar.gz(r-4.4-noble)
TraitEnvMLMWA_0.9001.tgz(r-4.4-emscripten)TraitEnvMLMWA_0.9001.tgz(r-4.3-emscripten)
TraitEnvMLMWA.pdf |TraitEnvMLMWA.html✨
TraitEnvMLMWA/json (API)
# Install 'TraitEnvMLMWA' in R: |
install.packages('TraitEnvMLMWA', repos = c('https://cajoterbraak.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cajoterbraak/traitenvmlmwa/issues
- MLM3 - MLM3-fit to Revisit data using trait C:N ratio and environmental variable TMG
- MLM3_Aravo - Quadratic MLM3-fit to Aravo data using SLA and Snow
- Revisit - Revisit data
Last updated 2 years agofrom:02216b3097. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 17 2024 |
R-4.5-win | OK | Nov 17 2024 |
R-4.5-linux | OK | Nov 17 2024 |
R-4.4-win | OK | Nov 17 2024 |
R-4.4-mac | OK | Nov 17 2024 |
R-4.3-win | OK | Nov 17 2024 |
R-4.3-mac | OK | Nov 17 2024 |
Exports:Bootstrap_test_prmtrcCWMSNC_regressionsdat4MLM2TE_objexpand4glmmmake_obj_for_traitenvMLM3_p_maxplot_MLM3WA_p_max
Dependencies:bootclicolorspacedplyrfansifarvergenericsggplot2glmmTMBgluegtableisobandlabelinglatticelifecyclelme4magrittrMASSMatrixmgcvminqamunsellnlmenloptrnumDerivpermutepillarpkgconfigR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangscalestibbletidyselectTMButf8vctrsviridisLitewithr